CRAN Package Check Results for Package NMF

Last updated on 2022-10-03 04:59:33 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.24.0 32.85 598.93 631.78 NOTE
r-devel-linux-x86_64-debian-gcc 0.24.0 26.54 437.31 463.85 ERROR
r-devel-linux-x86_64-fedora-clang 0.24.0 879.79 NOTE
r-devel-linux-x86_64-fedora-gcc 0.24.0 861.17 NOTE
r-devel-windows-x86_64 0.24.0 199.00 740.00 939.00 ERROR
r-patched-linux-x86_64 0.24.0 33.88 562.83 596.71 OK
r-release-linux-x86_64 0.24.0 30.82 573.33 604.15 OK
r-release-macos-arm64 0.24.0 291.00 NOTE
r-release-macos-x86_64 0.24.0 471.00 NOTE
r-release-windows-x86_64 0.24.0 156.00 762.00 918.00 OK
r-oldrel-macos-arm64 0.24.0 253.00 NOTE
r-oldrel-macos-x86_64 0.24.0 318.00 NOTE
r-oldrel-windows-ix86+x86_64 0.24.0 69.00 807.00 876.00 OK

Check Details

Version: 0.24.0
Check: Rd files
Result: NOTE
    checkRd: (-1) Frobenius-nmf.Rd:141: Escaped LaTeX specials: \#
    checkRd: (-1) KL-nmf.Rd:158: Escaped LaTeX specials: \#
    checkRd: (-1) NMFStrategyIterative-class.Rd:69: Escaped LaTeX specials: \#
    checkRd: (-1) NMFstd-class.Rd:179: Escaped LaTeX specials: \#
    checkRd: (-1) nmf.Rd:755: Escaped LaTeX specials: \#
    checkRd: (-1) nmf_update_KL.Rd:87: Escaped LaTeX specials: \#
    checkRd: (-1) nmf_update_euclidean.Rd:97: Escaped LaTeX specials: \#
    checkRd: (-1) offset-nmf.Rd:144: Escaped LaTeX specials: \#
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 0.24.0
Check: examples
Result: ERROR
    Running examples in ‘NMF-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: profplot
    > ### Title: Plotting Expression Profiles
    > ### Aliases: profplot profplot.default
    > ### Keywords: aplot
    >
    > ### ** Examples
    >
    > ## Don't show:
    > # roxygen generated flag
    > options(R_CHECK_RUNNING_EXAMPLES_=TRUE)
    > ## End(Don't show)
    >
    > # create a random target matrix
    > v <- rmatrix(35, 10)
    >
    > # fit a single NMF model
    > res <- nmf(v, 3)
    > profplot(res)
    >
    > # fit a multi-run NMF model
    > res2 <- nmf(v, 3, nrun=2)
    # NOTE - CRAN check detected: limiting maximum number of cores [2/32]
    > # ordering according to first profile
    > profplot(res2, Colv=1) # increasing
    >
    > # draw a profile correlation plot: this show how the basis components are
    > # returned in an unpredictable order
    > profplot(res, res2)
    Error in col["alpha", ] <- as.character(as.hexmode(alpha)) :
     incorrect number of subscripts on matrix
    Calls: profplot ... <Anonymous> -> .set.list.defaults -> expand_list -> alphacol
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.24.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘BiocManager’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.24.0
Check: examples
Result: ERROR
    Running examples in 'NMF-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: profplot
    > ### Title: Plotting Expression Profiles
    > ### Aliases: profplot profplot.default
    > ### Keywords: aplot
    >
    > ### ** Examples
    >
    > ## Don't show:
    > # roxygen generated flag
    > options(R_CHECK_RUNNING_EXAMPLES_=TRUE)
    > ## End(Don't show)
    >
    > # create a random target matrix
    > v <- rmatrix(35, 10)
    >
    > # fit a single NMF model
    > res <- nmf(v, 3)
    > profplot(res)
    >
    > # fit a multi-run NMF model
    > res2 <- nmf(v, 3, nrun=2)
    # NOTE - CRAN check detected: limiting maximum number of cores [2/56]
    > # ordering according to first profile
    > profplot(res2, Colv=1) # increasing
    >
    > # draw a profile correlation plot: this show how the basis components are
    > # returned in an unpredictable order
    > profplot(res, res2)
    Error in col["alpha", ] <- as.character(as.hexmode(alpha)) :
     incorrect number of subscripts on matrix
    Calls: profplot ... <Anonymous> -> .set.list.defaults -> expand_list -> alphacol
    Execution halted
Flavor: r-devel-windows-x86_64

Version: 0.24.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘doMPI’
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64