Last updated on 2023-02-04 03:55:25 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 19.20 | 205.87 | 225.07 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 13.68 | 149.21 | 162.89 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 273.64 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 294.40 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 34.00 | 260.00 | 294.00 | OK | |
| r-patched-linux-x86_64 | 0.1.6 | 15.32 | 177.88 | 193.20 | ERROR | |
| r-release-linux-x86_64 | 1.0.0 | 14.68 | 197.15 | 211.83 | OK | |
| r-release-macos-arm64 | 1.0.0 | 84.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 118.00 | OK | |||
| r-release-windows-x86_64 | 0.1.6 | 33.00 | 254.00 | 287.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 93.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 123.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.0.0 | 37.00 | 316.00 | 353.00 | OK |
Version: 0.1.6
Check: examples
Result: ERROR
Running examples in ‘hlaR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CalEpletMHCI
> ### Title: Calculate class I HLA eplet mismatch
> ### Aliases: CalEpletMHCI
>
> ### ** Examples
>
> dat<-read.csv(system.file("extdata/example","MHC_I_test.csv",package="hlaR"),sep=",",header=TRUE)
> re <- CalEpletMHCI(dat_in = dat, ver = 3)
Error in `mutate()`:
ℹ In argument: `index = (function (x, y) ...`.
Caused by error:
! Can't convert `y` <character> to match type of `x` <integer>.
Backtrace:
▆
1. ├─hlaR::CalEpletMHCI(dat_in = dat, ver = 3)
2. │ └─tbl_ep_mm %>% mutate_all(na_if, "")
3. ├─dplyr::mutate_all(., na_if, "")
4. │ ├─dplyr::mutate(.tbl, !!!funs)
5. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs)
6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
7. │ ├─base::withCallingHandlers(...)
8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
9. │ └─mask$eval_all_mutate(quo)
10. │ └─dplyr (local) eval()
11. ├─dplyr (local) `<fn>`(index, "")
12. │ └─vctrs::vec_cast(x = y, to = x, x_arg = "y", to_arg = "x")
13. └─vctrs (local) `<fn>`()
14. └─vctrs::vec_default_cast(...)
15. ├─base::withRestarts(...)
16. │ └─base (local) withOneRestart(expr, restarts[[1L]])
17. │ └─base (local) doWithOneRestart(return(expr), restart)
18. └─vctrs::stop_incompatible_cast(...)
19. └─vctrs::stop_incompatible_type(...)
20. └─vctrs:::stop_incompatible(...)
21. └─vctrs:::stop_vctrs(...)
22. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = vctrs_error_call(call))
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.1.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘allele-haplotype.Rmd’ using rmarkdown
--- finished re-building ‘allele-haplotype.Rmd’
--- re-building ‘eplet-mm.Rmd’ using rmarkdown
Quitting from lines 48-53 (eplet-mm.Rmd)
Error: processing vignette ‘eplet-mm.Rmd’ failed with diagnostics:
ℹ In argument: `index = (function (x, y) ...`.
Caused by error:
! Can't convert `y` <character> to match type of `x` <integer>.
--- failed re-building ‘eplet-mm.Rmd’
SUMMARY: processing the following file failed:
‘eplet-mm.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64