Rgff: R Utilities for GFF Files

R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.

Version: 0.1.5
Imports: rlang (≥ 0.4.12), stringi (≥ 1.7.6), data.tree (≥ 1.0.0), tidyr (≥ 1.1.4), tibble (≥ 3.1.6), dplyr (≥ 1.0.7), RJSONIO (≥ 1.3-1.6), magrittr (≥ 2.0.1)
Suggests: DiagrammeR (≥ 1.0.6.1), DiagrammeRsvg (≥ 0.1), rsvg (≥ 2.2.0), rmarkdown (≥ 2.11), knitr (≥ 1.36), GenomicRanges (≥ 1.46.1), rtracklayer (≥ 1.54.0), S4Vectors (≥ 0.32.3)
Published: 2022-09-23
Author: Juan Antonio Garcia-Martin ORCID iD [cre, aut], Juan Carlos Oliveros ORCID iD [aut, ctb], Rafael Torres-Perez ORCID iD [aut, ctb]
Maintainer: Juan Antonio Garcia-Martin <ja.garcia at cnb.csic.es>
License: GPL (≥ 3)
NeedsCompilation: no
Materials: NEWS
CRAN checks: Rgff results

Documentation:

Reference manual: Rgff.pdf
Vignettes: Using Rgff

Downloads:

Package source: Rgff_0.1.5.tar.gz
Windows binaries: r-devel: Rgff_0.1.3.zip, r-release: Rgff_0.1.4.zip, r-oldrel: Rgff_0.1.4.zip
macOS binaries: r-release (arm64): Rgff_0.1.5.tgz, r-oldrel (arm64): Rgff_0.1.5.tgz, r-release (x86_64): Rgff_0.1.4.tgz, r-oldrel (x86_64): Rgff_0.1.4.tgz
Old sources: Rgff archive

Linking:

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