When reading NONMEM results from xml will try nm:
prefixed tags and non-nm:
prefixed tags.
Omega and Sigma prior estimates are currently ignored (theta priors were already ignored)
Improve reading in theta
values from the xml
Read all NONMEM files using latin1 encoding to allow single byte parser to work
When lines in the NONMEM input dataset start with #
they are now ignored.
When all IDs are zero, NONMEM assumes restarting time gives different IDs; this is now reflected in NONMEM translation of IDs.
With linCmt()
parsing, expand the scope of conflicting parameters that will be renamed with an import.
Added better parsing for ELSE
where there is another IF
on the next line.
Prefixed conflicting VP
with rxm.
when linCmt()
models to be more accommodating when importing linear compartment models.
Added explicit requirement for rxode2 2.0.13
Added support of DADT(#)
statements on the right side of the equation, i.e. DADT(3) = DADT(1) + DADT(2)
(#164)
Added support of ADVAN#, TRANS#
(#161)
Added more NONMEM-specific solving options
Fixed security related format issues as requested by CRAN #167
Now omega
, thetaMat
, dfObs
and dfSub
are incorporated into model function (by default). You can change this with the nonmem2rx
keep
argument
Using the rxode2
2.0.13 makes sure that the solves for models where the endpoint is not determined in the typical nlmixr2
style will validate more often (due to a bug in solving in rxode2
).
Added support for ADVAN5
and ADVAN7
models
Add parsing of accept/ignore characters for example IGNORE=(C='C')
(See Issue #140)
Add more robust reading of NONMEM information (and add source) in nminfo()
(See issue #142)
Since NONMEM does not protect divide by zeros by default, the default for solveZero
is changed to solveZero = TRUE
for nonmem2rx
objects.
Fixed bug for renaming eta
and theta
when they are renamed so that the ui$iniDf
does not match the theta#
or eta#
(Issue #153)
Turned off testing of the as.nonmem2rx
example since it took too much time (according to CRAN)
LTO
, valgrind
etc)NEWS.md
file to track changes to the package.